PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0902s0018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 356aa    MW: 39768.7 Da    PI: 5.8879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0902s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.6e-29137196258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          dDgy+WrKYGqK++ g+++prsYYrCt++   +C ++k+v+rs+edp+v+eitY+g+H++
  Kaladp0902s0018.1.p 137 DDGYSWRKYGQKDILGAKYPRSYYRCTYRnikHCGATKQVQRSDEDPTVFEITYKGKHTC 196
                          8***************************98889*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.068131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-28132196IPR003657WRKY domain
SuperFamilySSF1182903.4E-25135196IPR003657WRKY domain
SMARTSM007744.3E-38136198IPR003657WRKY domain
PfamPF031063.6E-27137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MENWEQQTLI NELAQGMELA KQLRSHVGPS STTETREYLV QKILSSYDKA LLILNWSESS  60
SNGQGRWPQL NVAANLLPES PSSFDGSPHS DASDKGFKHQ PQQPEHVNDV SKKRKTQPKW  120
TDHVRIYTEN GLEGPHDDGY SWRKYGQKDI LGAKYPRSYY RCTYRNIKHC GATKQVQRSD  180
EDPTVFEITY KGKHTCVPEC DQNMVPIQQD EEVQRHNNNS NGPKQSHADD ILLHLENTLK  240
VNTEDMSNKE MTRHLPSGST ARTMNANYSA ADFDGSLMQL SSATSGSNNL PVSPFHQNSS  300
FGAGFGTLCC SESDRSDMFS SNASTTNSPY LDLDFTLDPA NPDLTFPFSV PGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-141371941872Probable WRKY transcription factor 4
2lex_A3e-141371941872Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304549.11e-109WRKY transcription factor 53 family protein
TrEMBLB9GXG91e-109B9GXG9_POPTR; WRKY transcription factor 53 family protein
TrEMBLC9DI101e-109C9DI10_9R
STRINGPOPTR_0003s13840.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-66WRKY family protein